IL_6R6G_145
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_145 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.1163
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6R6G|1|5|C|3166
6R6G|1|5|U|3167
6R6G|1|5|C|3168
6R6G|1|5|A|3169
6R6G|1|5|G|3170
6R6G|1|5|U|3171
6R6G|1|5|A|3172
6R6G|1|5|C|3173
*
6R6G|1|5|G|3178
6R6G|1|5|G|3179
6R6G|1|5|A|3180
6R6G|1|5|A|3181
6R6G|1|5|C|3182
6R6G|1|5|C|3183
6R6G|1|5|G|3184
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- uL3
- Chain H
- uL6
- Chain V
- eL14
- Chain m
- 60S ribosomal protein L40
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