IL_6R6G_190

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

6R6G|1|K|G|113, 6R6G|1|K|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_190 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.2795

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6R6G|1|K|U|112
6R6G|1|K|G|113
6R6G|1|K|G|114
6R6G|1|K|U|115
*
6R6G|1|K|A|348
6R6G|1|K|A|349

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain EE

Ribosomal protein S11

Chain x

40S ribosomal protein S4