IL_6R6G_217
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_217 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.1349
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6R6G|1|K|C|676
6R6G|1|K|G|677
6R6G|1|K|U|678
6R6G|1|K|A|679
6R6G|1|K|G|680
*
6R6G|1|K|U|1025
6R6G|1|K|C|1026
6R6G|1|K|A|1027
6R6G|1|K|A|1028
6R6G|1|K|G|1029
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain EE
- Ribosomal protein S11
- Chain QQ
- ribosomal protein uS15
- Chain TT
- Ribosomal protein S15a
- Chain VV
- Ribosomal protein S23
Coloring options: