IL_6R6G_231
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 6R6G|1|K|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_231 not in the Motif Atlas
- Geometric match to IL_7A0S_004
- Geometric discrepancy: 0.2818
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6R6G|1|K|G|952
6R6G|1|K|C|953
6R6G|1|K|U|954
6R6G|1|K|A|955
6R6G|1|K|G|956
*
6R6G|1|K|C|967
6R6G|1|K|U|968
6R6G|1|K|U|969
6R6G|1|K|G|970
6R6G|1|K|G|971
6R6G|1|K|A|972
6R6G|1|K|C|973
6R6G|1|K|C|974
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain MM
- 40S ribosomal protein S14
- Chain u
- 40S ribosomal protein S3a
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