3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
ACCA*UCCCU
Length
9 nucleotides
Bulged bases
6R6G|1|K|C|1215, 6R6G|1|K|C|1216
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_241 not in the Motif Atlas
Homologous match to IL_4V88_443
Geometric discrepancy: 0.1841
The information below is about IL_4V88_443
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.9
Basepair signature
cWW-cWS-cHS-L-cWW-tWH
Number of instances in this motif group
15

Unit IDs

6R6G|1|K|A|1214
6R6G|1|K|C|1215
6R6G|1|K|C|1216
6R6G|1|K|A|1217
*
6R6G|1|K|U|1681
6R6G|1|K|C|1682
6R6G|1|K|C|1683
6R6G|1|K|C|1684
6R6G|1|K|U|1685

Current chains

Chain K
18S ribosomal RNA

Nearby chains

Chain 2
Transfer RNA; tRNA
Chain 3
Transfer RNA; tRNA
Chain 4
mRNA
Chain FF
Ribosomal protein S28
Chain LL
40S ribosomal protein S26
Chain UU
Ribosomal protein S16
Chain y
Ribosomal protein S5

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1784 s
Application loaded.