IL_6R6G_258

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

6R6G|1|K|C|1553, 6R6G|1|K|A|1580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_258 not in the Motif Atlas

Geometric match to IL_5J7L_055

Geometric discrepancy: 0.2779

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6R6G|1|K|G|1550
6R6G|1|K|U|1551
6R6G|1|K|G|1552
6R6G|1|K|C|1553
6R6G|1|K|C|1554
6R6G|1|K|U|1555
6R6G|1|K|A|1556
6R6G|1|K|C|1557
6R6G|1|K|C|1558
*
6R6G|1|K|G|1577
6R6G|1|K|U|1578
6R6G|1|K|A|1579
6R6G|1|K|A|1580
6R6G|1|K|C|1581
6R6G|1|K|C|1582

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain 9

uS14

Chain GG

Ribosomal protein S20

Chain PP

eS19

Chain SS

eS10

Chain UU

Ribosomal protein S16

Chain w

Ribosomal protein S3