IL_6R6G_296

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCACUC*GGAG

Length

10 nucleotides

Bulged bases

6R6G|1|K|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_296 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.19

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6R6G|1|K|C|491
6R6G|1|K|C|492
6R6G|1|K|A|493
6R6G|1|K|C|494
6R6G|1|K|U|495
6R6G|1|K|C|496
*
6R6G|1|K|G|506
6R6G|1|K|G|507
6R6G|1|K|A|508
6R6G|1|K|G|509

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain DD

Ribosomal protein S9 (Predicted)

Chain NN

40S ribosomal protein S24

Chain x

40S ribosomal protein S4