IL_6R6G_301
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- ACCAC*GUCCCU
- Length
- 11 nucleotides
- Bulged bases
- 6R6G|1|K|C|1215, 6R6G|1|K|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_301 not in the Motif Atlas
- Geometric match to IL_5TBW_062
- Geometric discrepancy: 0.3808
- The information below is about IL_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_51005.1
- Basepair signature
- cWW-L-R-tWH-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6R6G|1|K|A|1214
6R6G|1|K|C|1215
6R6G|1|K|C|1216
6R6G|1|K|A|1217
6R6G|1|K|C|1218
*
6R6G|1|K|G|1680
6R6G|1|K|U|1681
6R6G|1|K|C|1682
6R6G|1|K|C|1683
6R6G|1|K|C|1684
6R6G|1|K|U|1685
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 3
- Transfer RNA; tRNA
- Chain 4
- mRNA
- Chain FF
- Ribosomal protein S28
- Chain LL
- 40S ribosomal protein S26
- Chain UU
- Ribosomal protein S16
- Chain y
- Ribosomal protein S5
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