IL_6R6P_060
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6R6P|1|5|G|1625, 6R6P|1|5|A|1637, 6R6P|1|5|A|1638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6P_060 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.0832
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6R6P|1|5|G|1624
6R6P|1|5|G|1625
6R6P|1|5|G|1626
*
6R6P|1|5|U|1636
6R6P|1|5|A|1637
6R6P|1|5|A|1638
6R6P|1|5|U|1639
6R6P|1|5|C|1640
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 1
- X-box-binding protein 1
- Chain A
- uL2
- Chain N
- Ribosomal protein L15
- Chain P
- uL22
- Chain j
- Ribosomal protein L37
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