IL_6R6P_193

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

6R6P|1|K|U|361, 6R6P|1|K|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6P_193 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1308

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6R6P|1|K|U|359
6R6P|1|K|A|360
6R6P|1|K|U|361
6R6P|1|K|C|362
6R6P|1|K|A|363
6R6P|1|K|A|364
*
6R6P|1|K|U|396
6R6P|1|K|G|397
6R6P|1|K|A|398
6R6P|1|K|C|399
6R6P|1|K|C|400
6R6P|1|K|A|401
6R6P|1|K|C|402
6R6P|1|K|G|403

Current chains

Chain K

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain EE

Ribosomal protein S11

Chain VV

Ribosomal protein S23