IL_6R6P_226
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6P_226 not in the Motif Atlas
- Geometric match to IL_4V88_436
- Geometric discrepancy: 0.128
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6R6P|1|K|C|1047
6R6P|1|K|G|1048
6R6P|1|K|A|1049
6R6P|1|K|A|1050
6R6P|1|K|G|1051
*
6R6P|1|K|C|1067
6R6P|1|K|G|1068
6R6P|1|K|U|1069
6R6P|1|K|A|1070
6R6P|1|K|G|1071
Current chains
- Chain K
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- uL2
- Chain MM
- uS11
- Chain ZZ
- eS26
Coloring options: