IL_6R7Q_202

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6R7Q|1|K|A|628, 6R7Q|1|K|U|630, 6R7Q|1|K|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_202 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1511

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6R7Q|1|K|G|611
6R7Q|1|K|U|612
6R7Q|1|K|G|613
6R7Q|1|K|C|614
6R7Q|1|K|C|615
6R7Q|1|K|A|616
6R7Q|1|K|G|617
*
6R7Q|1|K|C|624
6R7Q|1|K|G|625
6R7Q|1|K|G|626
6R7Q|1|K|U|627
6R7Q|1|K|A|628
6R7Q|1|K|A|629
6R7Q|1|K|U|630
6R7Q|1|K|U|631
6R7Q|1|K|C|632

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S30

Chain VV

Ribosomal protein S23

Chain w

Ribosomal protein S3