IL_6R7Q_204

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6R7Q|1|K|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_204 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.142

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6R7Q|1|K|G|665
6R7Q|1|K|U|666
6R7Q|1|K|U|667
6R7Q|1|K|A|668
6R7Q|1|K|A|669
6R7Q|1|K|A|670
6R7Q|1|K|A|671
*
6R7Q|1|K|U|1161
6R7Q|1|K|C|1162

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain LL

eS26

Chain VV

Ribosomal protein S23

Chain v

uS5