IL_6R7Q_230
3D structure
- PDB id
- 6R7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6R7Q|1|K|C|1215, 6R7Q|1|K|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R7Q_230 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1166
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6R7Q|1|K|A|1214
6R7Q|1|K|C|1215
6R7Q|1|K|C|1216
6R7Q|1|K|A|1217
*
6R7Q|1|K|U|1681
6R7Q|1|K|C|1682
6R7Q|1|K|C|1683
6R7Q|1|K|C|1684
6R7Q|1|K|U|1685
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 3
- Transfer RNA; tRNA
- Chain 4
- messenger RNA
- Chain FF
- Ribosomal protein S28
- Chain LL
- eS26
- Chain UU
- Ribosomal protein S16
- Chain y
- Ribosomal protein S5
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