IL_6R84_041

3D structure

PDB id

6R84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R84_041 not in the Motif Atlas

Homologous match to IL_5TBW_043

Geometric discrepancy: 0.3287

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6R84|1|1|G|1013
6R84|1|1|U|1014
6R84|1|1|U|1015
6R84|1|1|C|1016
6R84|1|1|C|1017
6R84|1|1|G|1018
*
6R84|1|1|U|1034
6R84|1|1|G|1035
6R84|1|1|A|1036
6R84|1|1|C|1037

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain H

60S ribosomal protein L5

Chain M

60S ribosomal protein L11-B