IL_6R87_053
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 6R87|1|1|U|1220, 6R87|1|1|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R87_053 not in the Motif Atlas
- Homologous match to IL_5TBW_054
- Geometric discrepancy: 0.3677
- The information below is about IL_5TBW_054
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6R87|1|1|U|1218
6R87|1|1|C|1219
6R87|1|1|U|1220
6R87|1|1|A|1221
6R87|1|1|G|1222
6R87|1|1|A|1223
6R87|1|1|C|1224
6R87|1|1|A|1225
6R87|1|1|G|1226
*
6R87|1|1|C|1283
6R87|1|1|C|1284
6R87|1|1|G|1285
6R87|1|1|A|1286
6R87|1|1|A|1287
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 7
- 60S ribosomal protein L9-A
- Chain U
- 60S ribosomal protein L20-A
- Chain o
- Ubiquitin-60S ribosomal protein L40
- Chain r
- 60S acidic ribosomal protein P0
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