IL_6R87_101

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_101 not in the Motif Atlas

Geometric match to IL_1MZP_003

Geometric discrepancy: 0.227

The information below is about IL_1MZP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

6R87|1|1|G|2466
6R87|1|1|G|2467
6R87|1|1|A|2468
6R87|1|1|G|2469
*
6R87|1|1|C|2476
6R87|1|1|G|2477
6R87|1|1|C|2478
6R87|1|1|C|2479
6R87|1|1|A|2480
6R87|1|1|G|2481
6R87|1|1|U|2482
6R87|1|1|G|2483
6R87|1|1|A|2484
6R87|1|1|A|2485
6R87|1|1|A|2486
6R87|1|1|U|2487
6R87|1|1|A|2488
6R87|1|1|C|2489

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L1-A