IL_6RBD_048

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6RBD|1|2|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBD_048 not in the Motif Atlas

Homologous match to IL_4V88_431

Geometric discrepancy: 0.1074

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6RBD|1|2|C|874
6RBD|1|2|G|875
6RBD|1|2|G|876
6RBD|1|2|G|877
6RBD|1|2|G|878
*
6RBD|1|2|C|950
6RBD|1|2|A|951
6RBD|1|2|A|952
6RBD|1|2|G|953

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1-A

Chain N

40S ribosomal protein S13