IL_6RBD_052

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBD_052 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.2027

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6RBD|1|2|C|990
6RBD|1|2|G|991
6RBD|1|2|A|992
6RBD|1|2|A|993
6RBD|1|2|G|994
*
6RBD|1|2|C|1010
6RBD|1|2|G|1011
6RBD|1|2|U|1012
6RBD|1|2|A|1013
6RBD|1|2|G|1014

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14-A

Chain y

Dimethyladenosine transferase