IL_6RBD_057

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

6RBD|1|2|C|1158, 6RBD|1|2|C|1159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBD_057 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.2072

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

6RBD|1|2|A|1157
6RBD|1|2|C|1158
6RBD|1|2|C|1159
6RBD|1|2|A|1160
*
6RBD|1|2|U|1617
6RBD|1|2|C|1618
6RBD|1|2|C|1619
6RBD|1|2|C|1620
6RBD|1|2|U|1621

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain c

40S ribosomal protein S28-A

Chain h

Pre-rRNA-processing protein PNO1