IL_6RBD_067

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBD_067 not in the Motif Atlas

Geometric match to IL_2QWY_009

Geometric discrepancy: 0.1519

The information below is about IL_2QWY_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

6RBD|1|2|C|1306
6RBD|1|2|U|1307
6RBD|1|2|G|1308
*
6RBD|1|2|C|1317
6RBD|1|2|G|1318

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S17-A