3D structure

PDB id
6RBE (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GAAAAAAUU*AUAUUAGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6RBE_040 not in the Motif Atlas
Homologous match to IL_4V88_425
Geometric discrepancy: 0.245
The information below is about IL_4V88_425
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53064.1
Basepair signature
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

6RBE|1|2|G|751
6RBE|1|2|A|752
6RBE|1|2|A|753
6RBE|1|2|A|754
6RBE|1|2|A|755
6RBE|1|2|A|756
6RBE|1|2|A|757
6RBE|1|2|U|758
6RBE|1|2|U|759
*
6RBE|1|2|A|791
6RBE|1|2|U|792
6RBE|1|2|A|793
6RBE|1|2|U|794
6RBE|1|2|U|795
6RBE|1|2|A|796
6RBE|1|2|G|797
6RBE|1|2|C|798

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain E
40S ribosomal protein S4-A
Chain J
40S ribosomal protein S9-A
Chain L
40S ribosomal protein S11-A
Chain W
40S ribosomal protein S22-A

Coloring options:


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