IL_6RBE_075

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

6RBE|1|2|A|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBE_075 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.265

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6RBE|1|2|C|1644
6RBE|1|2|G|1645
6RBE|1|2|C|1646
6RBE|1|2|U|1647
*
6RBE|1|2|A|1753
6RBE|1|2|A|1754
6RBE|1|2|A|1755
6RBE|1|2|A|1756
6RBE|1|2|G|1757

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S30-A