IL_6RBE_097

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

6RBE|1|2|U|1370, 6RBE|1|2|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBE_097 not in the Motif Atlas

Homologous match to IL_8P9A_471

Geometric discrepancy: 0.4472

The information below is about IL_8P9A_471

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6RBE|1|2|G|1352
6RBE|1|2|U|1353
6RBE|1|2|G|1354
*
6RBE|1|2|U|1369
6RBE|1|2|U|1370
6RBE|1|2|A|1371
6RBE|1|2|U|1372
6RBE|1|2|C|1373

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16-A

Chain T

40S ribosomal protein S19-A

Chain U

40S ribosomal protein S20