IL_6RI5_053

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6RI5|1|A|G|1236, 6RI5|1|A|G|1237, 6RI5|1|A|U|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RI5_053 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.5172

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.2

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6RI5|1|A|G|1234
6RI5|1|A|U|1235
6RI5|1|A|G|1236
6RI5|1|A|G|1237
6RI5|1|A|C|1238
*
6RI5|1|A|G|1250
6RI5|1|A|A|1251
6RI5|1|A|A|1252
6RI5|1|A|U|1253
6RI5|1|A|C|1254

Current chains

Chain A

25S RNA

Nearby chains