3D structure

PDB id
6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUGGC*GAAUC
Length
10 nucleotides
Bulged bases
6RI5|1|A|G|1236, 6RI5|1|A|G|1237, 6RI5|1|A|U|1253
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6RI5_053 not in the Motif Atlas
Homologous match to IL_8P9A_283
Geometric discrepancy: 0.5172
The information below is about IL_8P9A_283
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_16218.2
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
3

Unit IDs

6RI5|1|A|G|1234
6RI5|1|A|U|1235
6RI5|1|A|G|1236
6RI5|1|A|G|1237
6RI5|1|A|C|1238
*
6RI5|1|A|G|1250
6RI5|1|A|A|1251
6RI5|1|A|A|1252
6RI5|1|A|U|1253
6RI5|1|A|C|1254

Current chains

Chain A
25S RNA

Nearby chains

No other chains within 10Å

Coloring options:


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