IL_6RI5_116

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

6RI5|1|A|A|3142, 6RI5|1|A|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RI5_116 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1259

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6RI5|1|A|C|3004
6RI5|1|A|A|3005
6RI5|1|A|A|3006
6RI5|1|A|U|3007
*
6RI5|1|A|A|3139
6RI5|1|A|G|3140
6RI5|1|A|A|3141
6RI5|1|A|A|3142
6RI5|1|A|C|3143
6RI5|1|A|G|3144

Current chains

Chain A

25S RNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain J

60S ribosomal protein L16-B