IL_6RM3_012

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAAC*GUGGUAGC

Length

13 nucleotides

Bulged bases

6RM3|1|L50|G|659, 6RM3|1|L50|G|663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_012 not in the Motif Atlas

Geometric match to IL_5TBW_028

Geometric discrepancy: 0.1356

The information below is about IL_5TBW_028

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6RM3|1|L50|G|531
6RM3|1|L50|A|532
6RM3|1|L50|A|533
6RM3|1|L50|A|534
6RM3|1|L50|C|535
*
6RM3|1|L50|G|657
6RM3|1|L50|U|658
6RM3|1|L50|G|659
6RM3|1|L50|G|660
6RM3|1|L50|U|661
6RM3|1|L50|A|662
6RM3|1|L50|G|663
6RM3|1|L50|C|664

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LAA

uL15

Chain LC0

uL4

Chain LJJ

eL37

Chain LL0

eL13

Chain LN0

eL15