IL_6RM3_013

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGAAG*UGGAAGA

Length

13 nucleotides

Bulged bases

6RM3|1|L50|G|586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_013 not in the Motif Atlas

Geometric match to IL_3FTF_001

Geometric discrepancy: 0.2277

The information below is about IL_3FTF_001

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6RM3|1|L50|U|559
6RM3|1|L50|U|560
6RM3|1|L50|G|561
6RM3|1|L50|A|562
6RM3|1|L50|A|563
6RM3|1|L50|G|564
*
6RM3|1|L50|U|581
6RM3|1|L50|G|582
6RM3|1|L50|G|583
6RM3|1|L50|A|584
6RM3|1|L50|A|585
6RM3|1|L50|G|586
6RM3|1|L50|A|587

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LA0

uL2

Chain LPP

eL43

Chain LR0

eL19