IL_6RM3_022

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACACU*AAAU

Length

9 nucleotides

Bulged bases

6RM3|1|L50|A|754, 6RM3|1|L50|A|755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_022 not in the Motif Atlas

Geometric match to IL_4V88_443

Geometric discrepancy: 0.2503

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

6RM3|1|L50|A|726
6RM3|1|L50|C|727
6RM3|1|L50|A|728
6RM3|1|L50|C|729
6RM3|1|L50|U|730
*
6RM3|1|L50|A|753
6RM3|1|L50|A|754
6RM3|1|L50|A|755
6RM3|1|L50|U|756

Current chains

Chain L50

23S rRNA

Nearby chains

Chain L70

5S ribosomal RNA; 5S rRNA

Chain LD0

uL18

Chain LI0

uL16

Chain LT0

eL21