IL_6RM3_035

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAGUAA*UGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_035 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.2144

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6RM3|1|L50|G|1126
6RM3|1|L50|C|1127
6RM3|1|L50|A|1128
6RM3|1|L50|G|1129
6RM3|1|L50|U|1130
6RM3|1|L50|A|1131
6RM3|1|L50|A|1132
*
6RM3|1|L50|U|1713
6RM3|1|L50|G|1714
6RM3|1|L50|A|1715
6RM3|1|L50|A|1716
6RM3|1|L50|A|1717
6RM3|1|L50|C|1718

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LC0

uL4

Chain LP0

uL22