IL_6RM3_071

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCACU*ACG

Length

8 nucleotides

Bulged bases

6RM3|1|L50|C|2354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_071 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.2232

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6RM3|1|L50|C|2311
6RM3|1|L50|C|2312
6RM3|1|L50|A|2313
6RM3|1|L50|C|2314
6RM3|1|L50|U|2315
*
6RM3|1|L50|A|2353
6RM3|1|L50|C|2354
6RM3|1|L50|G|2355

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LB0

uL3

Chain LV0

uL14

Chain LW0

eL24