IL_6RXU_048
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUCAA*UGACAACG
- Length
- 14 nucleotides
- Bulged bases
- 6RXU|1|C1|U|897, 6RXU|1|C1|C|935
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RXU_048 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.2008
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6RXU|1|C1|U|895
6RXU|1|C1|A|896
6RXU|1|C1|U|897
6RXU|1|C1|C|898
6RXU|1|C1|A|899
6RXU|1|C1|A|900
*
6RXU|1|C1|U|932
6RXU|1|C1|G|933
6RXU|1|C1|A|934
6RXU|1|C1|C|935
6RXU|1|C1|A|936
6RXU|1|C1|A|937
6RXU|1|C1|C|938
6RXU|1|C1|G|939
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CP
- KRR1 small subunit processome component
- Chain Cf
- 40S ribosomal protein S8
- Chain Ck
- 40S ribosomal protein S11-like protein
Coloring options: