IL_6RXU_059

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*CAGC

Length

6 nucleotides

Bulged bases

6RXU|1|C1|A|1169, 6RXU|1|C1|G|1170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RXU_059 not in the Motif Atlas

Geometric match to IL_3IGI_013

Geometric discrepancy: 0.1601

The information below is about IL_3IGI_013

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6RXU|1|C1|G|1135
6RXU|1|C1|G|1136
*
6RXU|1|C1|C|1168
6RXU|1|C1|A|1169
6RXU|1|C1|G|1170
6RXU|1|C1|C|1171

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CI

Bms1

Chain UC

Utp3

Chain UK

U3 small nucleolar RNA-associated protein 11