IL_6RXU_062

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAG*UCAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RXU_062 not in the Motif Atlas

Homologous match to IL_4V88_418

Geometric discrepancy: 0.2123

The information below is about IL_4V88_418

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6RXU|1|C1|C|1211
6RXU|1|C1|G|1212
6RXU|1|C1|U|1213
6RXU|1|C1|A|1214
6RXU|1|C1|G|1215
*
6RXU|1|C1|U|1553
6RXU|1|C1|C|1554
6RXU|1|C1|A|1555
6RXU|1|C1|G|1556
6RXU|1|C1|G|1557

Current chains

Chain C1

35S rRNA

Nearby chains

Chain Ch

40S ribosomal protein S13-like protein

Chain Cm

40S ribosomal protein S22-like protein