IL_6RXU_075
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6RXU|1|C1|C|1742, 6RXU|1|C1|C|1743
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RXU_075 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1827
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6RXU|1|C1|A|1741
6RXU|1|C1|C|1742
6RXU|1|C1|C|1743
6RXU|1|C1|A|1744
*
6RXU|1|C1|U|2200
6RXU|1|C1|C|2201
6RXU|1|C1|C|2202
6RXU|1|C1|C|2203
6RXU|1|C1|U|2204
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CK
- Putative U3 small nucleolar ribonucleoprotein
- Chain Cc
- 40S ribosomal protein s5-like protein
- Chain Cj
- 40S ribosomal protein S16-like protein
- Chain Cp
- 40S ribosomal protein S28-like protein
- Chain UA
- Periodic tryptophan protein 2-like protein
- Chain UB
- Utp2
- Chain UL
- Utp12
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