IL_6RZZ_021

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

6RZZ|1|A|U|534, 6RZZ|1|A|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RZZ_021 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1151

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6RZZ|1|A|G|531
6RZZ|1|A|A|532
6RZZ|1|A|A|533
6RZZ|1|A|U|534
6RZZ|1|A|G|535
6RZZ|1|A|U|536
6RZZ|1|A|A|537
6RZZ|1|A|G|538
*
6RZZ|1|A|U|553
6RZZ|1|A|A|554
6RZZ|1|A|U|555
6RZZ|1|A|U|556
6RZZ|1|A|A|557
6RZZ|1|A|U|558
6RZZ|1|A|A|559
6RZZ|1|A|G|560
6RZZ|1|A|C|561

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14-A

Chain S

60S ribosomal protein L20-A