IL_6RZZ_050

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6RZZ|1|A|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RZZ_050 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.4432

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6RZZ|1|A|U|1218
6RZZ|1|A|C|1219
6RZZ|1|A|U|1220
6RZZ|1|A|A|1221
6RZZ|1|A|G|1222
6RZZ|1|A|A|1223
6RZZ|1|A|C|1224
6RZZ|1|A|A|1225
6RZZ|1|A|G|1226
*
6RZZ|1|A|C|1283
6RZZ|1|A|C|1284
6RZZ|1|A|G|1285
6RZZ|1|A|A|1286
6RZZ|1|A|A|1287

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L20-A