IL_6RZZ_056
3D structure
- PDB id
- 6RZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RZZ_056 not in the Motif Atlas
- Homologous match to IL_5TBW_061
- Geometric discrepancy: 0.0677
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6RZZ|1|A|G|1444
6RZZ|1|A|U|1445
6RZZ|1|A|A|1446
6RZZ|1|A|G|1447
6RZZ|1|A|U|1448
6RZZ|1|A|A|1449
6RZZ|1|A|G|1450
*
6RZZ|1|A|C|2354
6RZZ|1|A|G|2355
6RZZ|1|A|A|2356
6RZZ|1|A|A|2357
6RZZ|1|A|A|2358
6RZZ|1|A|C|2359
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain U
- 60S ribosomal protein L17-A
- Chain u
- Cytoplasmic 60S subunit biogenesis factor REI1
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: