IL_6RZZ_151

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACCGAGUAG*CGAAACU

Length

16 nucleotides

Bulged bases

6RZZ|1|x|C|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RZZ_151 not in the Motif Atlas

Homologous match to IL_8C3A_148

Geometric discrepancy: 0.149

The information below is about IL_8C3A_148

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.9

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6RZZ|1|x|A|72
6RZZ|1|x|C|73
6RZZ|1|x|C|74
6RZZ|1|x|G|75
6RZZ|1|x|A|76
6RZZ|1|x|G|77
6RZZ|1|x|U|78
6RZZ|1|x|A|79
6RZZ|1|x|G|80
*
6RZZ|1|x|C|100
6RZZ|1|x|G|101
6RZZ|1|x|A|102
6RZZ|1|x|A|103
6RZZ|1|x|A|104
6RZZ|1|x|C|105
6RZZ|1|x|U|106

Current chains

Chain x

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain S

60S ribosomal protein L20-A

Chain b

60S ribosomal protein L7-A