IL_8C3A_148

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACCGAGUAG*CGAAACU

Length

16 nucleotides

Bulged bases

8C3A|1|3|C|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.9

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8C3A|1|3|A|72
8C3A|1|3|C|73
8C3A|1|3|C|74
8C3A|1|3|G|75
8C3A|1|3|A|76
8C3A|1|3|G|77
8C3A|1|3|U|78
8C3A|1|3|A|79
8C3A|1|3|G|80
*
8C3A|1|3|C|100
8C3A|1|3|G|101
8C3A|1|3|A|102
8C3A|1|3|A|103
8C3A|1|3|A|104
8C3A|1|3|C|105
8C3A|1|3|U|106

Current chains

Chain 3

5S

Nearby chains

Chain 0

60S ribosomal protein L20

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 2

60S ribosomal protein L21-A

Chain o

60S ribosomal protein L7-A

Chain r

60S ribosomal protein L10