#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10 11 12 13 14 151-152-143-134-125-66-117-108-9
1 IL_8C3A_1488C3A0.244318x7 Sarcin-Ricin; G-bulge3 5S rRNAA72C74G75A76G77U78A79G80*C100G101A102A103A104C105U106cWWcWwtSHtHHcSHtWHtHScWW
2 IL_8P9A_3698P9A0.234918x7 Sarcin-Ricin; G-bulge (H)AS 5S rRNAA72C74G75A76G77U78A79G80*C100G101A102A103A104C105U106cWWcWwtSHtHHcSHtWHtHScWW
3 IL_7A0S_0067A0S0.108008x7 Sarcin-Ricin; G-bulgeX LSU rRNAC178U179C180A181G182U183A184C185*G165G166A167A168C169U170G171cWWcwWntSHntHHncSHtWHtHScWW
4 IL_4V9F_0064V9F0.075908x7 Sarcin-Ricin; G-bulge0 LSU rRNAC171U172C173A174G175U176A177U178*A158G159A160A161C162U163G164cWWcwWtSHtHHcSHtWHtHScWW
5 IL_5J7L_2505J7L0.067708x7 Sarcin-Ricin; G-bulgeDA LSU rRNAC201U202A203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcwWtSHtHHcSHtWHtHScWW
6 IL_9DFE_0069DFE0.000008x7 Sarcin-Ricin; G-bulge (H)1A LSU rRNAC201U202C203A204G205U206A207C208*G188G189A190A191C192U193G194cWWcwWtSHtHHcSHtWHtHScWW
7 IL_1JBR_0011JBR0.157708x7 Sarcin-Ricin; G-bulgeC+FRNA (18-mer) + RNA (13-mer)C6U7C8A9G10U11A12C13*G18G19A20A21C22C23G24cWWtSHtHHcSHtWHtHScWW
8 IL_4WF9_0094WF90.219108x7 Sarcin-Ricin; G-bulgeX LSU rRNAC241U242U243A244G245U246A247G248*C256G257A258A259A260C261G262cWWtSHtHHcSHtWHtHScWW
9 IL_7A0S_0077A0S0.205808x7 Sarcin-Ricin; G-bulgeX LSU rRNAG215U216U217A218G219U220A221G222*C230G231A232A233C234C235C236cWWntSHtHHcSHtWHtHScWW
10 IL_8P9A_3448P9A0.245408x7 Sarcin-Ricin; G-bulge (H)AR LSU rRNAC3018U3019U3020A3021G3022U3023A3024C3025*G3030G3031A3032A3033C3034A3035G3036cWWtSHtHHcSHtWHtHScWW
11 IL_5J7L_2895J7L0.266008x7 Sarcin-Ricin; G-bulgeDA LSU rRNAA1262U1263A1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcwWtSHtHHcSHtWHtHScWW
12 IL_4WF9_0484WF90.279708x7 Sarcin-Ricin; G-bulgeX LSU rRNAG1300U1301G1302A1303G1304U1305A1306G1307*U2038G2039A2040A2041A2042U2043C2044cWWcwWtSHtHHncSWtHScWW
13 IL_9DFE_0489DFE0.261708x7 Sarcin-Ricin; G-bulge (H)1A LSU rRNAA1262U1263G1264A1265G1266U1267A1268A1269*U2011G2012A2013A2014A2015U2016U2017cWWcwWtSHtHHcSHtWHtHScWW
14 IL_7A0S_0457A0S0.269208x7 Sarcin-Ricin; G-bulgeX LSU rRNAA1275U1276G1277A1278G1279U1280A1281A1282*U1994G1995A1996A1997A1998U1999U2000cWWcwWtSHcSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
ACCGAGUAG*CGAAACU2
CUCAGUAC*GGAACUG2
AUGAGUAA*UGAAAUU2
CUCAGUAU*AGAACUG1
CUAAGUAC*GGAACUG1
CUCAGUAC*GGAACCG1
CUUAGUAG*CGAAACG1
GUUAGUAG*CGAACCC1
CUUAGUAC*GGAACAG1
AUAAGUAA*UGAAAUU1
GUGAGUAG*UGAAAUC1
Non-Watson-Crick part of the motif
SequenceCounts
UCAGUA*GAACU3
UGAGUA*GAAAU3
CCGAGUA*GAAAC2
UAAGUA*GAACU1
UCAGUA*GAACC1
UUAGUA*GAAAC1
UUAGUA*GAACC1
UUAGUA*GAACA1
UAAGUA*GAAAU1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • 8x7 Sarcin-Ricin; G-bulge (10)
  • 8x7 Sarcin-Ricin; G-bulge (H) (4)
  • Basepair signature
    cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
    Heat map statistics
    Min 0.06 | Avg 0.22 | Max 0.35
    Help

    Coloring options:

    IL_8C3A_148:IL_8C3A_148 = 0IL_8C3A_148:IL_8P9A_369 = 0.0581IL_8C3A_148:IL_7A0S_006 = 0.233IL_8C3A_148:IL_4V9F_006 = 0.2437IL_8C3A_148:IL_5J7L_250 = 0.2364IL_8C3A_148:IL_9DFE_006 = 0.2443IL_8C3A_148:IL_1JBR_001 = 0.3103IL_8C3A_148:IL_4WF9_009 = 0.3187IL_8C3A_148:IL_7A0S_007 = 0.2855IL_8C3A_148:IL_8P9A_344 = 0.3147IL_8C3A_148:IL_5J7L_289 = 0.2794IL_8C3A_148:IL_4WF9_048 = 0.2782IL_8C3A_148:IL_9DFE_048 = 0.2848IL_8C3A_148:IL_7A0S_045 = 0.3504IL_8P9A_369:IL_8C3A_148 = 0.0581IL_8P9A_369:IL_8P9A_369 = 0IL_8P9A_369:IL_7A0S_006 = 0.232IL_8P9A_369:IL_4V9F_006 = 0.2334IL_8P9A_369:IL_5J7L_250 = 0.2304IL_8P9A_369:IL_9DFE_006 = 0.2349IL_8P9A_369:IL_1JBR_001 = 0.2996IL_8P9A_369:IL_4WF9_009 = 0.3158IL_8P9A_369:IL_7A0S_007 = 0.2868IL_8P9A_369:IL_8P9A_344 = 0.3134IL_8P9A_369:IL_5J7L_289 = 0.2808IL_8P9A_369:IL_4WF9_048 = 0.2777IL_8P9A_369:IL_9DFE_048 = 0.2796IL_8P9A_369:IL_7A0S_045 = 0.286IL_7A0S_006:IL_8C3A_148 = 0.233IL_7A0S_006:IL_8P9A_369 = 0.232IL_7A0S_006:IL_7A0S_006 = 0IL_7A0S_006:IL_4V9F_006 = 0.0991IL_7A0S_006:IL_5J7L_250 = 0.0907IL_7A0S_006:IL_9DFE_006 = 0.108IL_7A0S_006:IL_1JBR_001 = 0.1848IL_7A0S_006:IL_4WF9_009 = 0.206IL_7A0S_006:IL_7A0S_007 = 0.2007IL_7A0S_006:IL_8P9A_344 = 0.2554IL_7A0S_006:IL_5J7L_289 = 0.2723IL_7A0S_006:IL_4WF9_048 = 0.2893IL_7A0S_006:IL_9DFE_048 = 0.2813IL_7A0S_006:IL_7A0S_045 = 0.278IL_4V9F_006:IL_8C3A_148 = 0.2437IL_4V9F_006:IL_8P9A_369 = 0.2334IL_4V9F_006:IL_7A0S_006 = 0.0991IL_4V9F_006:IL_4V9F_006 = 0IL_4V9F_006:IL_5J7L_250 = 0.0771IL_4V9F_006:IL_9DFE_006 = 0.0759IL_4V9F_006:IL_1JBR_001 = 0.1783IL_4V9F_006:IL_4WF9_009 = 0.2356IL_4V9F_006:IL_7A0S_007 = 0.2257IL_4V9F_006:IL_8P9A_344 = 0.255IL_4V9F_006:IL_5J7L_289 = 0.274IL_4V9F_006:IL_4WF9_048 = 0.2896IL_4V9F_006:IL_9DFE_048 = 0.2763IL_4V9F_006:IL_7A0S_045 = 0.2786IL_5J7L_250:IL_8C3A_148 = 0.2364IL_5J7L_250:IL_8P9A_369 = 0.2304IL_5J7L_250:IL_7A0S_006 = 0.0907IL_5J7L_250:IL_4V9F_006 = 0.0771IL_5J7L_250:IL_5J7L_250 = 0IL_5J7L_250:IL_9DFE_006 = 0.0677IL_5J7L_250:IL_1JBR_001 = 0.1755IL_5J7L_250:IL_4WF9_009 = 0.213IL_5J7L_250:IL_7A0S_007 = 0.2019IL_5J7L_250:IL_8P9A_344 = 0.2525IL_5J7L_250:IL_5J7L_289 = 0.2732IL_5J7L_250:IL_4WF9_048 = 0.2891IL_5J7L_250:IL_9DFE_048 = 0.272IL_5J7L_250:IL_7A0S_045 = 0.2752IL_9DFE_006:IL_8C3A_148 = 0.2443IL_9DFE_006:IL_8P9A_369 = 0.2349IL_9DFE_006:IL_7A0S_006 = 0.108IL_9DFE_006:IL_4V9F_006 = 0.0759IL_9DFE_006:IL_5J7L_250 = 0.0677IL_9DFE_006:IL_9DFE_006 = 0IL_9DFE_006:IL_1JBR_001 = 0.1577IL_9DFE_006:IL_4WF9_009 = 0.2191IL_9DFE_006:IL_7A0S_007 = 0.2058IL_9DFE_006:IL_8P9A_344 = 0.2454IL_9DFE_006:IL_5J7L_289 = 0.266IL_9DFE_006:IL_4WF9_048 = 0.2797IL_9DFE_006:IL_9DFE_048 = 0.2617IL_9DFE_006:IL_7A0S_045 = 0.2692IL_1JBR_001:IL_8C3A_148 = 0.3103IL_1JBR_001:IL_8P9A_369 = 0.2996IL_1JBR_001:IL_7A0S_006 = 0.1848IL_1JBR_001:IL_4V9F_006 = 0.1783IL_1JBR_001:IL_5J7L_250 = 0.1755IL_1JBR_001:IL_9DFE_006 = 0.1577IL_1JBR_001:IL_1JBR_001 = 0IL_1JBR_001:IL_4WF9_009 = 0.1494IL_1JBR_001:IL_7A0S_007 = 0.1553IL_1JBR_001:IL_8P9A_344 = 0.184IL_1JBR_001:IL_5J7L_289 = 0.2927IL_1JBR_001:IL_4WF9_048 = 0.2894IL_1JBR_001:IL_9DFE_048 = 0.2803IL_1JBR_001:IL_7A0S_045 = 0.2873IL_4WF9_009:IL_8C3A_148 = 0.3187IL_4WF9_009:IL_8P9A_369 = 0.3158IL_4WF9_009:IL_7A0S_006 = 0.206IL_4WF9_009:IL_4V9F_006 = 0.2356IL_4WF9_009:IL_5J7L_250 = 0.213IL_4WF9_009:IL_9DFE_006 = 0.2191IL_4WF9_009:IL_1JBR_001 = 0.1494IL_4WF9_009:IL_4WF9_009 = 0IL_4WF9_009:IL_7A0S_007 = 0.1175IL_4WF9_009:IL_8P9A_344 = 0.2203IL_4WF9_009:IL_5J7L_289 = 0.3IL_4WF9_009:IL_4WF9_048 = 0.2937IL_4WF9_009:IL_9DFE_048 = 0.2866IL_4WF9_009:IL_7A0S_045 = 0.2865IL_7A0S_007:IL_8C3A_148 = 0.2855IL_7A0S_007:IL_8P9A_369 = 0.2868IL_7A0S_007:IL_7A0S_006 = 0.2007IL_7A0S_007:IL_4V9F_006 = 0.2257IL_7A0S_007:IL_5J7L_250 = 0.2019IL_7A0S_007:IL_9DFE_006 = 0.2058IL_7A0S_007:IL_1JBR_001 = 0.1553IL_7A0S_007:IL_4WF9_009 = 0.1175IL_7A0S_007:IL_7A0S_007 = 0IL_7A0S_007:IL_8P9A_344 = 0.2128IL_7A0S_007:IL_5J7L_289 = 0.2949IL_7A0S_007:IL_4WF9_048 = 0.2856IL_7A0S_007:IL_9DFE_048 = 0.2891IL_7A0S_007:IL_7A0S_045 = 0.2892IL_8P9A_344:IL_8C3A_148 = 0.3147IL_8P9A_344:IL_8P9A_369 = 0.3134IL_8P9A_344:IL_7A0S_006 = 0.2554IL_8P9A_344:IL_4V9F_006 = 0.255IL_8P9A_344:IL_5J7L_250 = 0.2525IL_8P9A_344:IL_9DFE_006 = 0.2454IL_8P9A_344:IL_1JBR_001 = 0.184IL_8P9A_344:IL_4WF9_009 = 0.2203IL_8P9A_344:IL_7A0S_007 = 0.2128IL_8P9A_344:IL_8P9A_344 = 0IL_8P9A_344:IL_5J7L_289 = 0.2507IL_8P9A_344:IL_4WF9_048 = 0.269IL_8P9A_344:IL_9DFE_048 = 0.2706IL_8P9A_344:IL_7A0S_045 = 0.267IL_5J7L_289:IL_8C3A_148 = 0.2794IL_5J7L_289:IL_8P9A_369 = 0.2808IL_5J7L_289:IL_7A0S_006 = 0.2723IL_5J7L_289:IL_4V9F_006 = 0.274IL_5J7L_289:IL_5J7L_250 = 0.2732IL_5J7L_289:IL_9DFE_006 = 0.266IL_5J7L_289:IL_1JBR_001 = 0.2927IL_5J7L_289:IL_4WF9_009 = 0.3IL_5J7L_289:IL_7A0S_007 = 0.2949IL_5J7L_289:IL_8P9A_344 = 0.2507IL_5J7L_289:IL_5J7L_289 = 0IL_5J7L_289:IL_4WF9_048 = 0.1179IL_5J7L_289:IL_9DFE_048 = 0.1131IL_5J7L_289:IL_7A0S_045 = 0.1307IL_4WF9_048:IL_8C3A_148 = 0.2782IL_4WF9_048:IL_8P9A_369 = 0.2777IL_4WF9_048:IL_7A0S_006 = 0.2893IL_4WF9_048:IL_4V9F_006 = 0.2896IL_4WF9_048:IL_5J7L_250 = 0.2891IL_4WF9_048:IL_9DFE_006 = 0.2797IL_4WF9_048:IL_1JBR_001 = 0.2894IL_4WF9_048:IL_4WF9_009 = 0.2937IL_4WF9_048:IL_7A0S_007 = 0.2856IL_4WF9_048:IL_8P9A_344 = 0.269IL_4WF9_048:IL_5J7L_289 = 0.1179IL_4WF9_048:IL_4WF9_048 = 0IL_4WF9_048:IL_9DFE_048 = 0.1043IL_4WF9_048:IL_7A0S_045 = 0.1265IL_9DFE_048:IL_8C3A_148 = 0.2848IL_9DFE_048:IL_8P9A_369 = 0.2796IL_9DFE_048:IL_7A0S_006 = 0.2813IL_9DFE_048:IL_4V9F_006 = 0.2763IL_9DFE_048:IL_5J7L_250 = 0.272IL_9DFE_048:IL_9DFE_006 = 0.2617IL_9DFE_048:IL_1JBR_001 = 0.2803IL_9DFE_048:IL_4WF9_009 = 0.2866IL_9DFE_048:IL_7A0S_007 = 0.2891IL_9DFE_048:IL_8P9A_344 = 0.2706IL_9DFE_048:IL_5J7L_289 = 0.1131IL_9DFE_048:IL_4WF9_048 = 0.1043IL_9DFE_048:IL_9DFE_048 = 0IL_9DFE_048:IL_7A0S_045 = 0.1008IL_7A0S_045:IL_8C3A_148 = 0.3504IL_7A0S_045:IL_8P9A_369 = 0.286IL_7A0S_045:IL_7A0S_006 = 0.278IL_7A0S_045:IL_4V9F_006 = 0.2786IL_7A0S_045:IL_5J7L_250 = 0.2752IL_7A0S_045:IL_9DFE_006 = 0.2692IL_7A0S_045:IL_1JBR_001 = 0.2873IL_7A0S_045:IL_4WF9_009 = 0.2865IL_7A0S_045:IL_7A0S_007 = 0.2892IL_7A0S_045:IL_8P9A_344 = 0.267IL_7A0S_045:IL_5J7L_289 = 0.1307IL_7A0S_045:IL_4WF9_048 = 0.1265IL_7A0S_045:IL_9DFE_048 = 0.1008IL_7A0S_045:IL_7A0S_045 = 0IL_8C3A_148IL_8P9A_369IL_7A0S_006IL_4V9F_006IL_5J7L_250IL_9DFE_006IL_1JBR_001IL_4WF9_009IL_7A0S_007IL_8P9A_344IL_5J7L_289IL_4WF9_048IL_9DFE_048IL_7A0S_045Discrepancy0.000.050.100.150.200.250.300.35
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