Motif IL_04346.9 Version IL_04346.9 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	break		9		10		11		12		13		14		15	1-15	2-14	3-13	4-12	5-6	6-11	7-10	8-9
1	IL_8C3A_148	8C3A	0.2443	1	8x7 Sarcin-Ricin; G-bulge	3	5S rRNA	A	72	C	74	G	75	A	76	G	77	U	78	A	79	G	80	*	C	100	G	101	A	102	A	103	A	104	C	105	U	106	cWW	cWw	tSH	tHH	cSH	tWH	tHS	cWW
2	IL_8P9A_369	8P9A	0.2349	1	8x7 Sarcin-Ricin; G-bulge (H)	AS	5S rRNA	A	72	C	74	G	75	A	76	G	77	U	78	A	79	G	80	*	C	100	G	101	A	102	A	103	A	104	C	105	U	106	cWW	cWw	tSH	tHH	cSH	tWH	tHS	cWW
3	IL_7A0S_006	7A0S	0.1080	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	C	178	U	179	C	180	A	181	G	182	U	183	A	184	C	185	*	G	165	G	166	A	167	A	168	C	169	U	170	G	171	cWW	cwW	ntSH	ntHH	ncSH	tWH	tHS	cWW
4	IL_4V9F_006	4V9F	0.0759	0	8x7 Sarcin-Ricin; G-bulge	0	LSU rRNA	C	171	U	172	C	173	A	174	G	175	U	176	A	177	U	178	*	A	158	G	159	A	160	A	161	C	162	U	163	G	164	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
5	IL_5J7L_250	5J7L	0.0677	0	8x7 Sarcin-Ricin; G-bulge	DA	LSU rRNA	C	201	U	202	A	203	A	204	G	205	U	206	A	207	C	208	*	G	188	G	189	A	190	A	191	C	192	U	193	G	194	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
6	IL_9DFE_006	9DFE	0.0000	0	8x7 Sarcin-Ricin; G-bulge (H)	1A	LSU rRNA	C	201	U	202	C	203	A	204	G	205	U	206	A	207	C	208	*	G	188	G	189	A	190	A	191	C	192	U	193	G	194	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
7	IL_1JBR_001	1JBR	0.1577	0	8x7 Sarcin-Ricin; G-bulge	C+F	RNA (18-mer) + RNA (13-mer)	C	6	U	7	C	8	A	9	G	10	U	11	A	12	C	13	*	G	18	G	19	A	20	A	21	C	22	C	23	G	24	cWW		tSH	tHH	cSH	tWH	tHS	cWW
8	IL_4WF9_009	4WF9	0.2191	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	C	241	U	242	U	243	A	244	G	245	U	246	A	247	G	248	*	C	256	G	257	A	258	A	259	A	260	C	261	G	262	cWW		tSH	tHH	cSH	tWH	tHS	cWW
9	IL_7A0S_007	7A0S	0.2058	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	G	215	U	216	U	217	A	218	G	219	U	220	A	221	G	222	*	C	230	G	231	A	232	A	233	C	234	C	235	C	236	cWW		ntSH	tHH	cSH	tWH	tHS	cWW
10	IL_8P9A_344	8P9A	0.2454	0	8x7 Sarcin-Ricin; G-bulge (H)	AR	LSU rRNA	C	3018	U	3019	U	3020	A	3021	G	3022	U	3023	A	3024	C	3025	*	G	3030	G	3031	A	3032	A	3033	C	3034	A	3035	G	3036	cWW		tSH	tHH	cSH	tWH	tHS	cWW
11	IL_5J7L_289	5J7L	0.2660	0	8x7 Sarcin-Ricin; G-bulge	DA	LSU rRNA	A	1262	U	1263	A	1264	A	1265	G	1266	U	1267	A	1268	A	1269	*	U	2011	G	2012	A	2013	A	2014	A	2015	U	2016	U	2017	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
12	IL_4WF9_048	4WF9	0.2797	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	G	1300	U	1301	G	1302	A	1303	G	1304	U	1305	A	1306	G	1307	*	U	2038	G	2039	A	2040	A	2041	A	2042	U	2043	C	2044	cWW	cwW	tSH	tHH	ncSW		tHS	cWW
13	IL_9DFE_048	9DFE	0.2617	0	8x7 Sarcin-Ricin; G-bulge (H)	1A	LSU rRNA	A	1262	U	1263	G	1264	A	1265	G	1266	U	1267	A	1268	A	1269	*	U	2011	G	2012	A	2013	A	2014	A	2015	U	2016	U	2017	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
14	IL_7A0S_045	7A0S	0.2692	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	A	1275	U	1276	G	1277	A	1278	G	1279	U	1280	A	1281	A	1282	*	U	1994	G	1995	A	1996	A	1997	A	1998	U	1999	U	2000	cWW	cwW	tSH		cSH	tWH	tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
ACCGAGUAG*CGAAACU	2
CUCAGUAC*GGAACUG	2
AUGAGUAA*UGAAAUU	2
CUCAGUAU*AGAACUG	1
CUAAGUAC*GGAACUG	1
CUCAGUAC*GGAACCG	1
CUUAGUAG*CGAAACG	1
GUUAGUAG*CGAACCC	1
CUUAGUAC*GGAACAG	1
AUAAGUAA*UGAAAUU	1
GUGAGUAG*UGAAAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCAGUA*GAACU	3
UGAGUA*GAAAU	3
CCGAGUA*GAAAC	2
UAAGUA*GAACU	1
UCAGUA*GAACC	1
UUAGUA*GAAAC	1
UUAGUA*GAACC	1
UUAGUA*GAACA	1
UAAGUA*GAAAU	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: 8x7 Sarcin-Ricin; G-bulge (10)
8x7 Sarcin-Ricin; G-bulge (H) (4)
Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Heat map statistics: Min 0.06 | Avg 0.22 | Max 0.35

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Coloring options: Nucleotide numbers

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