IL_6S05_004
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUUAGUAA*UGAAGCGG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S05_004 not in the Motif Atlas
- Geometric match to IL_3DIL_003
- Geometric discrepancy: 0.2978
- The information below is about IL_3DIL_003
- Detailed Annotation
- 9x8 Sarcin-Ricin with GA cWW pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34470.3
- Basepair signature
- cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6S05|1|A|C|81
6S05|1|A|C|82
6S05|1|A|U|83
6S05|1|A|U|84
6S05|1|A|A|85
6S05|1|A|G|86
6S05|1|A|U|87
6S05|1|A|A|88
6S05|1|A|A|89
*
6S05|1|A|U|97
6S05|1|A|G|98
6S05|1|A|A|99
6S05|1|A|A|100
6S05|1|A|G|101
6S05|1|A|C|102
6S05|1|A|G|103
6S05|1|A|G|104
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain K
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L28
- Chain O
- 60S ribosomal protein L15-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain l
- 60S ribosomal protein L42-A
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