IL_6S05_018
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUG*CAGCU
- Length
- 9 nucleotides
- Bulged bases
- 6S05|1|A|A|578
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S05_018 not in the Motif Atlas
- Geometric match to IL_1MFQ_004
- Geometric discrepancy: 0.2693
- The information below is about IL_1MFQ_004
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6S05|1|A|G|510
6S05|1|A|G|511
6S05|1|A|U|512
6S05|1|A|G|513
*
6S05|1|A|C|577
6S05|1|A|A|578
6S05|1|A|G|579
6S05|1|A|C|580
6S05|1|A|U|581
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain G
- 60S ribosomal protein L6-A
- Chain M
- 60S ribosomal protein L14-A
- Chain b
- 60S ribosomal protein L7-A
- Chain f
- 60S ribosomal protein L33-A
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