IL_6S05_039

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAG*CUUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S05_039 not in the Motif Atlas

Geometric match to IL_6ZDU_001

Geometric discrepancy: 0.3615

The information below is about IL_6ZDU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6S05|1|A|A|997
6S05|1|A|A|998
6S05|1|A|G|999
*
6S05|1|A|C|1049
6S05|1|A|U|1050
6S05|1|A|U|1051
6S05|1|A|U|1052

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L5

Chain T

60S ribosomal protein L21-A

Chain x

5S ribosomal RNA; 5S rRNA