IL_6S05_079

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S05_079 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1284

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6S05|1|A|U|2211
6S05|1|A|C|2212
6S05|1|A|A|2213
6S05|1|A|A|2214
6S05|1|A|A|2215
6S05|1|A|G|2216
6S05|1|A|U|2217
*
6S05|1|A|A|2228
6S05|1|A|A|2229
6S05|1|A|C|2230
6S05|1|A|C|2231
6S05|1|A|A|2232
6S05|1|A|A|2233
6S05|1|A|G|2234

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain h

60S ribosomal protein L36-A

Chain w

60S ribosomal export protein NMD3