IL_6S05_081

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6S05|1|A|A|2281, 6S05|1|A|C|2287, 6S05|1|A|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S05_081 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1088

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6S05|1|A|C|2277
6S05|1|A|C|2278
6S05|1|A|A|2279
6S05|1|A|A|2280
6S05|1|A|A|2281
6S05|1|A|U|2282
6S05|1|A|G|2283
6S05|1|A|C|2284
6S05|1|A|C|2285
6S05|1|A|U|2286
6S05|1|A|C|2287
6S05|1|A|G|2288
*
6S05|1|A|C|2304
6S05|1|A|G|2305
6S05|1|A|C|2306
6S05|1|A|G|2307

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain o

Large subunit GTPase 1

Chain w

60S ribosomal export protein NMD3