IL_6S05_084

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUG*CAC

Length

7 nucleotides

Bulged bases

6S05|1|A|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S05_084 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.2252

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6S05|1|A|G|2409
6S05|1|A|U|2410
6S05|1|A|U|2411
6S05|1|A|G|2412
*
6S05|1|A|C|2810
6S05|1|A|A|2811
6S05|1|A|C|2812

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L4-A

Chain N

60S ribosomal protein L28