3D structure

PDB id
6S05 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UA*UAAG
Length
6 nucleotides
Bulged bases
6S05|1|A|A|2911
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6S05_101 not in the Motif Atlas
Geometric match to IL_4V9F_089
Geometric discrepancy: 0.1775
The information below is about IL_4V9F_089
Detailed Annotation
Major groove platform with intercalation
Broad Annotation
Major groove platform
Motif group
IL_94991.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
15

Unit IDs

6S05|1|A|U|2891
6S05|1|A|A|2892
*
6S05|1|A|U|2909
6S05|1|A|A|2910
6S05|1|A|A|2911
6S05|1|A|G|2912

Current chains

Chain A
25S ribosomal RNA

Nearby chains

Chain F
60S ribosomal protein L9-A
Chain J
60S ribosomal protein L16-B

Coloring options:


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