IL_6S05_110

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6S05|1|A|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S05_110 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.1985

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6S05|1|A|G|3102
6S05|1|A|A|3103
6S05|1|A|U|3104
6S05|1|A|U|3105
6S05|1|A|A|3106
6S05|1|A|U|3107
*
6S05|1|A|A|3127
6S05|1|A|G|3128
6S05|1|A|A|3129
6S05|1|A|A|3130
6S05|1|A|U|3131
6S05|1|A|C|3132

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L9-A

Chain J

60S ribosomal protein L16-B