IL_6S05_117

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGG*CUUUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S05_117 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3793

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6S05|1|A|C|3324
6S05|1|A|G|3325
6S05|1|A|G|3326
6S05|1|A|G|3327
*
6S05|1|A|C|3379
6S05|1|A|U|3380
6S05|1|A|U|3381
6S05|1|A|U|3382
6S05|1|A|G|3383

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A